🎨 SEQUENCE SHADING

BoxShade Sequence Shading

Apply shading to identical and similar residues in a multiple sequence alignment. Supports FASTA, CLUSTAL, and MSF formats. Similarity threshold, display width, and color scheme can be freely adjusted.Sequence data are processed only in your browser.

📥 Alignment Input
Input format
Sequences: 0   Alignment length: —
⚙️ Shading Settings
Shading Conditions
Sequence type
Threshold (0–1)
Similarity groups
Display Settings
Color scheme
Display width (residues)
Show ruler
Position numbers
Consensus row
Font
Font size (px)
📊 Analysis Summary
🎨 Shading Results
🖥 GeneQuick personal DNA sequence design and editing app

An easy-to-use app for researchers and students on their own PCs.

Free download →